Overview | Introduction | Installation | Open the Vignette in R | CAFT: Compositional Accelerated Failure Time Model for Microbiome Data Differential Abundance | Example data sets illustration | Binary outcome phenotypes example | Multicategory outcome phenotypes example | Separate estimation and testing workflow | Parallel computation | Bootstrap implementation of CAFT | How to cite CAFT | References

Overview | Introduction | Installation | Open the Vignette in R | CAFT: Compositional Accelerated Failure Time Model for Microbiome Data Differential Abundance | Example data sets illustration | Binary outcome phenotypes example | Multicategory outcome phenotypes example | Separate estimation and testing workflow | Parallel computation | Bootstrap implementation of CAFT | How to cite CAFT | References

Introduction | Simulate a time series data with changepoints | The objective function for optimization | Basic GA | Population chromosome initialization | Island model GA | Parallel computing | Changepoint configuration distance calculation | References

Overview | Best subset variable selection | Changepoint detection | Optimal spline knot selection | Example data set | Different GA model set-up | Spline options: piecewise polynomials, natural cubic, and B-splines | Reproducibility | References